PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008896.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 479aa MW: 51804.1 Da PI: 5.6533

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008896.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	9.8e-40	129	189	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s HL.SW.v1.0.G008896.1 129 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 189 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	122	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	131	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MLESKDPAIT LFGKKIPLPY EDEAPAVSGD DLASQPSERE VDNDEEEAEP EKDSSPRSVC 60 DEDSEQDGDL SPETDYSRKL DSLPESSSVN PKTPSINEES SHSKIEKTEK EQGDATNTNN 120 SQEKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KACQRYWTAG GTMRNVPVGA 180 GRRKNKNSAS HYRHISISEA LHAARIDASS NEAHHAALKT NGRVLSFGID APICDSMASV 240 LNLADKKVSS GNGNGFHKME GKENNGDDCS SVSSVTVSNS ADDIGRNCPQ EPQMHSINGQ 300 RFPSVPCLPG VPWPYPWNSG VPSPAFCPPG FPMSFYPAAY WNCAVPGAWN VPWFPPQPSS 360 PNQKSPSSGS GSNSPTLGKH SRDGDTLKPD SSENEEPPKQ KNGSVLVPKT LRIDDPSEAA 420 KSSIWATLGI KNDSISGGGM FKAFQSKSND MKGISEASPV LRANPAALSR SLNFHENS*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MLESKDPAIT LFGKKIPLPY EDEAPAVSGD DLASQPSERE VDNDEEEAEP EKDSSPRSVC  60
DEDSEQDGDL SPETDYSRKL DSLPESSSVN PKTPSINEES SHSKIEKTEK EQGDATNTNN  120
SQEKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KACQRYWTAG GTMRNVPVGA  180
GRRKNKNSAS HYRHISISEA LHAARIDASS NEAHHAALKT NGRVLSFGID APICDSMASV  240
LNLADKKVSS GNGNGFHKME GKENNGDDCS SVSSVTVSNS ADDIGRNCPQ EPQMHSINGQ  300
RFPSVPCLPG VPWPYPWNSG VPSPAFCPPG FPMSFYPAAY WNCAVPGAWN VPWFPPQPSS  360
PNQKSPSSGS GSNSPTLGKH SRDGDTLKPD SSENEEPPKQ KNGSVLVPKT LRIDDPSEAA  420
KSSIWATLGI KNDSISGGGM FKAFQSKSND MKGISEASPV LRANPAALSR SLNFHENS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089911.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-124	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A2P5AJN0	0.0	A0A2P5AJN0_PARAD; Zinc finger, Dof-type
STRING	XP_010089911.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-111	cycling DOF factor 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]