PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008987.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 260aa    MW: 29224.5 Da    PI: 4.7505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008987.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19101150355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+ +++g
  HL.SW.v1.0.G008987.1 101 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAAMAYDQAAFAMRG 150
                           9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.169100158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30100159IPR001471AP2/ERF domain
SMARTSM003801.3E-38100164IPR001471AP2/ERF domain
PfamPF008472.3E-13101150IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23101159IPR016177DNA-binding domain
PRINTSPR003678.1E-11101112IPR001471AP2/ERF domain
CDDcd000181.30E-21101159No hitNo description
PRINTSPR003678.1E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSWDSLLMMN NNNLENDNQV PLPFNENDTQ EMLLYGVLAE SNISSNTTTT TTTSSTSINK  60
LDHEEVNSKS EEVEVVYHDH DHDHEDPMAM AMMMTKEDIS YRGVRKRPWG KYAAEIRDST  120
RNGVRVWLGT FDTAEAAAMA YDQAAFAMRG SLAVLNFPAE QVCQSLRDMK YRLEEGCSPV  180
LALKKRHSMK RKTSKKTKLK QTQIITNNNN NNHNNGVVYS ETTSFDNVVV LEDLGAEYLE  240
ELLSISESST GSYEGACPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-29101158360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102245.17e-85ethylene-responsive transcription factor 1B
TrEMBLA0A2P5DJK31e-102A0A2P5DJK3_TREOI; AP2/ERF transcription factor
STRINGXP_010102245.13e-84(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-36ethylene response factor 1