PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009255.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 472aa    MW: 51204.8 Da    PI: 4.9149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009255.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WTteEd++l  +++q+G g W+t +++ g+ R++k+c++rw +yl
  HL.SW.v1.0.G009255.1 14 KGAWTTEEDQKLSAYITQHGEGGWRTLPQKAGLSRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding48.61.9e-1567110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg ++ eE+e + ++++ lG++ W+tIa+ ++  Rt++++k++w++
  HL.SW.v1.0.G009255.1  67 RGEFSNEEEETIMRLHAVLGNK-WSTIAKQLP-MRTDNEIKNHWNT 110
                           899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.347961IPR017930Myb domain
SuperFamilySSF466891.09E-2711108IPR009057Homeodomain-like
SMARTSM007175.1E-121363IPR001005SANT/Myb domain
PfamPF002497.9E-141461IPR001005SANT/Myb domain
CDDcd001676.99E-91661No hitNo description
PROSITE profilePS5129424.15462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2465114IPR009057Homeodomain-like
SMARTSM007174.0E-1366114IPR001005SANT/Myb domain
PfamPF002491.2E-1367110IPR001005SANT/Myb domain
CDDcd001674.46E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGRAPCCNVE GLKKGAWTTE EDQKLSAYIT QHGEGGWRTL PQKAGLSRCG KSCRLRWTNY  60
LRPGIKRGEF SNEEEETIMR LHAVLGNKWS TIAKQLPMRT DNEIKNHWNT RLKRIVAEMG  120
KDNFLTRADI ENSVAEHGIG NNSEIEKSPT KKLGVVDSKG SVSTSFKLLN DVASKLKASN  180
FLASLINQEV GKSNSTEANS VSSPTTTTTT ATIATPANLL NRVATTLNSP KSCSLGAIKA  240
IFSKTLEGST TSGSSDNSFS EVGIGIENTS DVRSPESENA VQVSIPFSSS ARLLNKMAAK  300
FALMNRIQAV VGDKIQHYVS GNATDGSTRS GSDGGSSHVS EPQVLEQNLL DDWGPKISHF  360
DGVSDTCRGE TCNQLDMVFE PDHQDQVFLL EVAGEDQKEK GNVRSNEDNE LIRSMSNLSD  420
SNEQVLVFTS NSSTSYDGSG QMEVILSDLE AANNWDDCIN FDEFLDAAIL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2791162108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093589.11e-115transcription factor MYB34
TrEMBLA0A2P5F7280.0A0A2P5F728_TREOI; MYB transcription factor
STRINGXP_010093589.11e-114(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2559633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74080.13e-65myb domain protein 122