PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009342.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 353aa    MW: 39346.9 Da    PI: 6.0858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009342.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20197247255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  HL.SW.v1.0.G009342.1 197 HYRGVRQRP-WGKFAAEIRDP---NrKGSRVWLGTFETAIEAAKAYDRAAFKLRG 247
                           8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-31196255No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32196256IPR001471AP2/ERF domain
SMARTSM003804.6E-38197261IPR001471AP2/ERF domain
PfamPF008475.5E-14197247IPR001471AP2/ERF domain
PROSITE profilePS5103224.223197255IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22197256IPR016177DNA-binding domain
PRINTSPR003671.6E-13198209IPR001471AP2/ERF domain
PRINTSPR003671.6E-13237257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MANIDEFSKL QFIKQHLLGD LSSPLSNFPF GLTSEWSSSE SNQDCSTSTP ESLIQVSDYL  60
DSDDVFEFIP GQNLSQTHFS GFESKPEVVD FTTPKTLNIS NNSNNSCSNN SFEFESKPQI  120
FDLRRSNSGS SCNSFEFESK PQITRSKSTD SSSPSSRKRS LTISLPAKTP TQWIQFGAPK  180
PVAQVEKPTV AQDEKKHYRG VRQRPWGKFA AEIRDPNRKG SRVWLGTFET AIEAAKAYDR  240
AAFKLRGSKA ILNFPLEAGK SDQEEENVTV KPVEVKRHRQ EEEGTEAKPA VLEKKIKLTE  300
TEDTSLSYLR DIPLTPSNWM AWDSDLKGVF SVPPLSPLSP HPSLGFPQLM VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-31196256161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896698.17e-99ethylene-responsive transcription factor 5-like
TrEMBLA0A2P5CVP01e-125A0A2P5CVP0_TREOI; AP2/ERF transcription factor
STRINGXP_010107751.12e-97(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-53ethylene responsive element binding factor 5