PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009400.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 500aa    MW: 55140.6 Da    PI: 6.3086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009400.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.16e-52461731128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evd+yk+ePwdL  k ++k++++e+yfFs  dkky +g r nrat++gyWkatg
  HL.SW.v1.0.G009400.1  46 LAPGFRFHPTDEELVIYYLKRKVCGKTFRF-NAITEVDVYKSEPWDLAdKsSLKSRDQEYYFFSALDKKYGNGARMNRATNQGYWKATG 133
                           579*************************99.89**************75347888999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +d++v++ ++++vglkktLvf++grap+g++t+Wvmheyrl
  HL.SW.v1.0.G009400.1 134 NDRPVKR-DSKTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 173
                           ******9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-5942198IPR003441NAC domain
PROSITE profilePS5100556.95646198IPR003441NAC domain
PfamPF023652.2E-2648173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGRESLVSAQ RTMAAPPTSP PSLSLSVPSE KTRLAPQAKP PAAPTLAPGF RFHPTDEELV  60
IYYLKRKVCG KTFRFNAITE VDVYKSEPWD LADKSSLKSR DQEYYFFSAL DKKYGNGARM  120
NRATNQGYWK ATGNDRPVKR DSKTVGLKKT LVFHSGRAPD GKRTNWVMHE YRLVEEELER  180
GRGGAAQDAF VLCRIFHKSN IGPPSGQRYA PFIEEEWEDD ESAVVPGINN GDEVAAVPGR  240
NKSVGGNSQG TCAEGNNHGT SIERNASDTY IEGDIVQQDT ESTEKDVHHA LDLPREKQIV  300
LPVCKIERQD EYTMPCVVNR EDSLDGRSLP GVDEQQHLSL GVDRVSSPLL IYKRRRHNDS  360
SSSNGIASEN SSGAAQDRSS STTTAATTMS TVTTATTRPP TTRNFLSALV EYSLLESIEP  420
KESTPVPPEL NAGNIDSALP PSCLKFIQDL QHEIHQISIE RDTLKFEMMS AQAMINILQS  480
RIEVLNKENS DLKRSSGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-494520019170NAC domain-containing protein 19
3swm_B4e-494520019170NAC domain-containing protein 19
3swm_C4e-494520019170NAC domain-containing protein 19
3swm_D4e-494520019170NAC domain-containing protein 19
3swp_A4e-494520019170NAC domain-containing protein 19
3swp_B4e-494520019170NAC domain-containing protein 19
3swp_C4e-494520019170NAC domain-containing protein 19
3swp_D4e-494520019170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090441.10.0NAC domain containing protein 50 isoform X1
TrEMBLA0A2P5FLD40.0A0A2P5FLD4_TREOI; NAC domain containing protein
STRINGXP_010090441.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-115NAC domain containing protein 52