PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009629.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 359aa    MW: 39158.4 Da    PI: 9.0349
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009629.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.1e-4138114278
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           C v+gC++dls++++yhrrhkvCe+hsk+p+v++ g+eqrfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+q+
  HL.SW.v1.0.G009629.1  38 CLVDGCNSDLSKCRDYHRRHKVCEIHSKTPKVTIGGREQRFCQQCSRFHSLGEFDEEKRSCRKRLDGHNRRRRKPQP 114
                           **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-343299IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18835112IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-3936117IPR004333Transcription factor, SBP-box
PfamPF031109.8E-3138111IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDDGLKFKWA SDVESSSSSM PLKRTRGPPS NGIQVPSCLV DGCNSDLSKC RDYHRRHKVC  60
EIHSKTPKVT IGGREQRFCQ QCSRFHSLGE FDEEKRSCRK RLDGHNRRRR KPQPEAMSLG  120
SGRFISSYQG TRFSPFHNPQ AFPNAAVSSA LAMAAAATAK PEFSDIRKNP FTGSLNQSYS  180
SSGGGGGKEF SFLQSPSCTL SEASSVTQSL MDSNPAFNNC GNSQRFFANN WLYRDSVDSS  240
CALSLLSSST PTDTKETGLS HMVQQQQQPN SSSTGGRGQQ PLFPPASLHY SGLGMVVSDQ  300
PVVAVTSAMV TATTGGDNDN FHCQEMFRIR PEGSSSGGHH HYHHHHQYSS LRGNRIPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-2830111584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194111KRSCRKRLDGHNRRRRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090650.11e-121teosinte glume architecture 1
TrEMBLA0A2P5B9521e-164A0A2P5B952_PARAD; SBP-box transcription factor
STRINGXP_010090650.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-45SBP family protein