PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009671.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family DBB
Protein Properties Length: 193aa    MW: 20500.7 Da    PI: 4.9668
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009671.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06544639
              zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          C+ +++++   +C+++  +lC +C  + H+       H++
  HL.SW.v1.0.G009671.1  5 CDYCGDQRSMVYCRSDAACLCLSCDRNVHSAnilskrHSR 44
                          *****************************65677777776 PP
2zf-B_box231.7e-074689441
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                           +C++++++++   C + ++ lC++C   +H g       H++++
  HL.SW.v1.0.G009671.1 46 LICERCHSQPALVRCAEERVSLCQNCDWMGH-GastssstHKRQT 89
                          68*****************************.5588888898776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471147IPR000315B-box-type zinc finger
CDDcd000214.20E-6447No hitNo description
SMARTSM003362.5E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7024390IPR000315B-box-type zinc finger
CDDcd000211.48E-44790No hitNo description
SMARTSM003360.474890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MGYLCDYCGD QRSMVYCRSD AACLCLSCDR NVHSANILSK RHSRTLICER CHSQPALVRC  60
AEERVSLCQN CDWMGHGAST SSSTHKRQTI RCYSGCPSAA ELSSIWSSIL DSPIGGESAC  120
EQEMGLMSIN ENSSGNDPGP SENASCSVGV NSGTSMAKAS VWPSSSSVPE INAASQVQDL  180
PDESDNATFP KV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028610.11e-107zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-69COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2P5ER891e-116A0A2P5ER89_TREOI; Zinc finger-domain containing protein
STRINGXP_010107355.11e-106(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-72B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]