PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009813.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 334aa    MW: 36042.4 Da    PI: 10.2557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009813.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.8e-14131175347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  HL.SW.v1.0.G009813.1 131 PWTEEEHRTFLVGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKY 175
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.905124180IPR017930Myb domain
SuperFamilySSF466891.87E-17125180IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-18127179IPR006447Myb domain, plants
SMARTSM007172.9E-10128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-11128174IPR009057Homeodomain-like
PfamPF002492.3E-11131175IPR001005SANT/Myb domain
CDDcd001675.27E-9131176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTT SSSTATTFVN NNNNYANSSL RLFGVKVDIL SSSSSSAASS  60
SMNINALKKS FSMDCLMHSS LSSASSSPSS SLSSRIAPDE TISDHHKAAT NIGYLSDGLI  120
GRAQERKKGV PWTEEEHRTF LVGLEKLGKG DWRGISRSFV TTRTPTQVAS HAQKYFLRQA  180
TLNKKKRRSS LFDMVGISPL HSGSFRPSDD ESIRCSQHKD QNQQNGIVMP LLLELSSSKH  240
GQKLASDYNH QKPVVDFTQV ASHHPPNNSV PVWLHGLMDS QLKSKSNIIA SKPSSSNGAG  300
LDLELNLAGP RPSLEQNKPS NPGPLFVGPI TVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906593.11e-99transcription factor MYBS3-like isoform X2
TrEMBLA0A2P5BNR21e-131A0A2P5BNR2_PARAD; GAMYB transcription factor
STRINGEMJ034123e-94(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-51MYB_related family protein