PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009845.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 496aa    MW: 54509.5 Da    PI: 8.38
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009845.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.5e-29112169260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK vkg+e+ rsYYrCt+++C vkk++e+s+ ++k+v+i+Y g+H+h+k
  HL.SW.v1.0.G009845.1 112 EDGYNWRKYGQKLVKGNEYVRSYYRCTHPNCLVKKQLECSH-EGKIVDIVYFGQHDHPK 169
                           7***************************************9.***************85 PP
2WRKY102.91.8e-32290348159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK+vkg+ +prsYYrC+ +gCpvkk+ver+++d+kvv  tYeg+Hnh+
  HL.SW.v1.0.G009845.1 290 VNDGFRWRKYGQKMVKGNLNPRSYYRCSNSGCPVKKHVERASHDTKVVMATYEGQHNHD 348
                           58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-26104169IPR003657WRKY domain
PROSITE profilePS5081121.023106170IPR003657WRKY domain
SuperFamilySSF1182901.31E-23107169IPR003657WRKY domain
SMARTSM007744.9E-33111169IPR003657WRKY domain
PfamPF031062.6E-22112168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-34277350IPR003657WRKY domain
SuperFamilySSF1182901.22E-28282350IPR003657WRKY domain
PROSITE profilePS5081133.924285350IPR003657WRKY domain
SMARTSM007743.4E-38290349IPR003657WRKY domain
PfamPF031061.7E-25291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MVPLGESVAD EAPDKQQETE RLNTGNHVSR EISGTDVCTP QSDKRGKLTC IKSEKAESVR  60
GSALDAFNLN QLEKSSPKIP MKASKGPETG VRTSQSGQEG STPSIVREKV SEDGYNWRKY  120
GQKLVKGNEY VRSYYRCTHP NCLVKKQLEC SHEGKIVDIV YFGQHDHPKL QHNIPVAVGF  180
VLSIVEEKQR RIASLTPAEG TSVDEHRKPP TQNDHVDTPL TPKIAAMPSN DSSKSTLSQS  240
NKIKDDSDDD PDFKRQKKDK HNIKTTTEDK PTSTSGPRVV VQTLSEVDIV NDGFRWRKYG  300
QKMVKGNLNP RSYYRCSNSG CPVKKHVERA SHDTKVVMAT YEGQHNHDMP PGRTVTHNVS  360
ESSAPATADQ VDNAAKSDGK IASLDMVVNA ILEHPSKPPK EQPNGELRTG SSPNNMTDSN  420
MAVESCLTPD GKPDKLENGK SVAKEERDPF QNVAVESGND NNNLRLTSWK KSKRNGESST  480
VKSEPSQVVD NKSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-35110352276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881045.11e-162WRKY transcription factor 1
SwissprotQ9SI371e-84WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2P5ESE20.0A0A2P5ESE2_TREOI; WRKY domain containing protein
STRINGXP_010112795.11e-138(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-86zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]