PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G010384.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YB

Protein Properties

Length: 162aa MW: 18264.2 Da PI: 4.7679

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G010384.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	164.9	1.1e-51	23	117	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +++r+lPianv+rimk++lP nakisk+aket+qecvsef+sfvt+easdkc+re+rkt+ngdd++wala lGf+dy+ plk yl++yr HL.SW.v1.0.G010384.1 23 QDQRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCRRERRKTVNGDDVCWALAALGFDDYAGPLKRYLHRYR 111 46799********************************************************************************** PP NF-YB 92 elegek 97 ele ++ HL.SW.v1.0.G010384.1 112 ELEVDR 117 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-48	22	154	IPR009072	Histone-fold
SuperFamily	SSF47113	1.86E-37	24	132	IPR009072	Histone-fold
Pfam	PF00808	3.2E-26	27	91	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.3E-16	55	73	No hit	No description
PRINTS	PR00615	2.3E-16	74	92	No hit	No description
PRINTS	PR00615	2.3E-16	93	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDNLIGADST NNGSDGVDKL LDQDQRLLPI ANVGRIMKQI LPPNAKISKE AKETMQECVS 60 EFVSFVTGEA SDKCRRERRK TVNGDDVCWA LAALGFDDYA GPLKRYLHRY RELEVDRSSS 120 IINNNQENNN NNSNLMVMRL NDENLRAFED HGRRNDDDAC Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	9e-41	22	112	8	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012082708.1	2e-63	nuclear transcription factor Y subunit B-4
Swissprot	O82248	1e-53	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2P5ERX2	7e-71	A0A2P5ERX2_TREOI; Nuclear transcription factor Y subunit B
STRING	XP_009349502.1	8e-61	(Pyrus x bretschneideri)
STRING	XP_009352332.1	8e-61	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-55	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]