PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010524.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 396aa    MW: 44797.5 Da    PI: 9.8223
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010524.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-151372092898
                           --..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                    B3  28 gkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                           ++ ++s ++tl+ ++  ++W vk++yr ++g+   +++GW  Fv++n+Lk+gD++vF l +  +  ++ v +fr
  HL.SW.v1.0.G010524.1 137 LN-NRSYDVTLKVPNEnKTWPVKYTYREHKGAaPRFQGGWTTFVQENNLKVGDVCVFVLLKAiNIVSFEVVIFR 209
                           44.46789999995554*********99999989***********************98876666666776666 PP
2B3469.5e-15265359196
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                           ffk+ +++++  +  +++p + ae+h ++  ++  ++l +++g++W  +++ rk++ +     v+ +GWkeF   n+Lk+gD+++F+l 
  HL.SW.v1.0.G010524.1 265 FFKIVIQPSNKWH--VRVPLDIAEKHIKND-GG--IVLANPNGEQWPAQFKRRKSPVTgksaAVIFDGWKEFMTNNNLKVGDICMFELL 348
                           7788877777766..699********5443.43..***************77555444455577778********************98 PP

                           SSSEE..EEEE CS
                    B3  86 grsefelvvkv 96 
                           +++e  + v +
  HL.SW.v1.0.G010524.1 349 DKTELVFQVLI 359
                           75665555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.4E-6116211IPR003340B3 DNA binding domain
CDDcd100171.92E-14131209No hitNo description
SuperFamilySSF1019363.14E-14132210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-15136210IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11139210IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533144211IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-18259361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-18261363IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-16264361No hitNo description
SMARTSM010193.8E-15265363IPR003340B3 DNA binding domain
PfamPF023625.4E-13265359IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52295363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLTFRYDGNS EIYVVIFNTN TVEIDYPATP VHFGMPNIDV KLRVPKREVI DDSIEILEEI  60
GVKSSCSQPS KRMKAYTPGK LDSPSKSTDK SDTNTAKKMN NGIPKTKKTL DKSERIAALQ  120
RTVGFKSEHP YFKMIHLNNR SYDVTLKVPN ENKTWPVKYT YREHKGAAPR FQGGWTTFVQ  180
ENNLKVGDVC VFVLLKAINI VSFEVVIFRA GESLKGSVGT IHNEAGTRCL LNSSKKQEIG  240
KQLPLTLDER VKILEKDAIE HEKPFFKIVI QPSNKWHVRV PLDIAEKHIK NDGGIVLANP  300
NGEQWPAQFK RRKSPVTGKS AAVIFDGWKE FMTNNNLKVG DICMFELLDK TELVFQVLIV  360
RVSDFLKQQR YQAISSPEGE NKPKGDERVK IETDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5FY291e-127A0A2P5FY29_TREOI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-13related to vernalization1 1