PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010525.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 269aa    MW: 31036.7 Da    PI: 10.3926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010525.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-166841599
                          -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          ++++p kf++++g  k+ s  + ++ + g +W++kl  +kk g+++l+kGW eF+k   +k g +++Fk++g+sef  +v ++++
  HL.SW.v1.0.G010525.1  6 LVRIPHKFIRRCG--KTLSDSVFIKLPCGSKWKMKL--TKKEGKIWLEKGWPEFAKHYSIKRGSMLIFKYVGKSEF--HVVICDT 84
                          679*********9..458889***************..**********************************9999..9*99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.704185IPR003340B3 DNA binding domain
SMARTSM010191.1E-7385IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-18584IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-14584IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-18784IPR015300DNA-binding pseudobarrel domain
CDDcd100174.44E-12883No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAYAGLVRIP HKFIRRCGKT LSDSVFIKLP CGSKWKMKLT KKEGKIWLEK GWPEFAKHYS  60
IKRGSMLIFK YVGKSEFHVV ICDTSTAEID YPSKNIDFEL RGPKEEVVED DYVETLYDFS  120
PSSNFKKREK SSFLPCSQPH NKRIRRTSPT ARKGRKSPYI TSIEKAIIFA RVSFESERPF  180
FKTVMQPTYV RAEFFKLVTS AFSSFVMGIK FHFKFTLSTA LIMKVSNGVK VIMELVLVSQ  240
RKKLKLTELA PTVLGMVMEL VLCWYEIM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ411e-60A0A2P5BZ41_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.18e-21B3 family protein