PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G010759.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 262aa    MW: 28812.4 Da    PI: 6.6315
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G010759.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-1473124156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                           + y+GVr++  rg+Wv+e+r p     k+ r +lg+f +++ Aa+a++ a+++++ge
  HL.SW.v1.0.G010759.1  73 PVYRGVRQR--RGKWVCELRQP---HsKNSRLWLGTFSSPDVAARAYDVAALAIKGE 124
                           68****975..6******9995...2245***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1073124IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1774132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2674132IPR001471AP2/ERF domain
SMARTSM003803.8E-2674137IPR001471AP2/ERF domain
PROSITE profilePS5103220.16574131IPR001471AP2/ERF domain
CDDcd000187.18E-2575132No hitNo description
PRINTSPR003672.5E-77586IPR001471AP2/ERF domain
PRINTSPR003672.5E-7113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNFSTEESPS SSSSSSCSSH HVRKDISPQN LINVNSSPLN CKPSSNTRVS NTVNSLQEKR  60
KSGRKKFKET RHPVYRGVRQ RRGKWVCELR QPHSKNSRLW LGTFSSPDVA ARAYDVAALA  120
IKGESASLNF PEERTRYHQQ QHHQPRQQFA WASSSSSSAV VPVVATTDQE EVSQDDKGNK  180
GSTAGTDSTS SAPPSSEAAA ANASRNVEVY YDEEELFNMP GLLDSLAEGL MLTPPAMQKG  240
FSWDDYNGFE DSGDDFSLWS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13721331274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241428.17e-63PREDICTED: dehydration-responsive element-binding protein 1F
TrEMBLA0A2P5C4R81e-76A0A2P5C4R8_TREOI; AP2/ERF domain containing protein
STRINGXP_008241428.13e-62(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-27C-repeat/DRE binding factor 1