PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011096.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WOX

Protein Properties

Length: 259aa MW: 28955.3 Da PI: 8.7183

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011096.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.5	1.7e-21	96	155	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le+l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ HL.SW.v1.0.G011096.1 96 TRWNPTQEQIGILETLYRGgMRTPNAQQIEQITAQLgkfgKIEGKNVFYWFQNHKARERQ 155 7***************99************************************97 PP
2	Wus_type_Homeobox	116.8	9.8e-38	96	157	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L ++Gkie+kNVfyWFQN+kaRerqkq HL.SW.v1.0.G011096.1 96 TRWNPTQEQIGILETLYRGGMRTPNAQQIEQITAQLGKFGKIEGKNVFYWFQNHKARERQKQ 157 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.301	91	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-13	91	162	IPR009057	Homeodomain-like
SMART	SM00389	6.1E-7	93	160	IPR001356	Homeobox domain
CDD	cd00086	2.40E-5	96	157	No hit	No description
Pfam	PF00046	3.5E-19	96	155	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.1E-8	97	155	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MGGSMKVHQF ARGLWEAHEP SLTLGCKRLR PLAPKLQPNS PDSSTISSSA TTSPNSIAPF 60 DLKSFIRPES GPRKLGSSLD HHKKDSSQVE THPGGTRWNP TQEQIGILET LYRGGMRTPN 120 AQQIEQITAQ LGKFGKIEGK NVFYWFQNHK ARERQKQKRN SLGLSHSPRT PTSTNTNTSN 180 TIPAVTVALD TSRLGGEYVV EREQEGCTSP YKRKCRSWGF ECLVEDYSRL CYGNNEEEDQ 240 DQEGDRTLEL FPLHPEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110805.1	1e-129	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	6e-77	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2P5F8W2	1e-143	A0A2P5F8W2_TREOI; Homeodomain transcription factor
STRING	XP_010110805.1	1e-129	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	8e-75	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]