PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011193.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 243aa MW: 27990.1 Da PI: 8.4277

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011193.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.7	7.1e-47	18	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF+Ptdeelv +yL+ kv + + +++++e+++++++PwdLp++ e++ yfFs+++ ky++g+r+nr t+sgyWkatg HL.SW.v1.0.G011193.1 18 LPPGFRFQPTDEELVFQYLRCKVFSCPlpPYSSDIVPEINLCNYDPWDLPSS-GDLEQDRYFFSNKEAKYKNGNRSNRRTSSGYWKATG 105 79*********************9965334578***********43.4456789************************* PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+++s+ ++ vg++ktLvfykg+ p+g +tdW+mhey+l HL.SW.v1.0.G011193.1 106 SDKKIVSStMKHIVGTRKTLVFYKGKPPHGARTDWFMHEYTL 147 **9866778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-52	14	171	IPR003441	NAC domain
PROSITE profile	PS51005	53.949	18	171	IPR003441	NAC domain
Pfam	PF02365	4.4E-25	19	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MNNNKYNFVR NNNGVIKLPP GFRFQPTDEE LVFQYLRCKV FSCPLPPYSS DIVPEINLCN 60 YDPWDLPSSG DLEQDRYFFS NKEAKYKNGN RSNRRTSSGY WKATGSDKKI VSSTMKHIVG 120 TRKTLVFYKG KPPHGARTDW FMHEYTLTFD PQQITQNQTE LNWVLCRIFY KDRSTKKDVE 180 DDHHEGTSVQ NWRENNYEPK MFDLVMGCNV NYNNMGPVSS SASSSSSSSS FTDVTSSNAT 240 YY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-43	16	177	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-43	16	177	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-43	16	177	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-43	16	177	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	16	177	18	174	NAC domain-containing protein 19
3swm_B	1e-42	16	177	18	174	NAC domain-containing protein 19
3swm_C	1e-42	16	177	18	174	NAC domain-containing protein 19
3swm_D	1e-42	16	177	18	174	NAC domain-containing protein 19
3swp_A	1e-42	16	177	18	174	NAC domain-containing protein 19
3swp_B	1e-42	16	177	18	174	NAC domain-containing protein 19
3swp_C	1e-42	16	177	18	174	NAC domain-containing protein 19
3swp_D	1e-42	16	177	18	174	NAC domain-containing protein 19
4dul_A	9e-43	16	177	15	171	NAC domain-containing protein 19
4dul_B	9e-43	16	177	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093938.1	2e-98	NAC domain-containing protein 83
Swissprot	Q9FY93	8e-69	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2P5FD27	1e-121	A0A2P5FD27_TREOI; NAC domain containing protein
STRING	XP_010093938.1	7e-98	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-69	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]