PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011196.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 531aa    MW: 59692.7 Da    PI: 6.5781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011196.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.1e-07184205426
                           ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           ++C++f + G+Ck+G++Ck+ Hg
  HL.SW.v1.0.G011196.1 184 KICHYFNK-GFCKHGSNCKYYHG 205
                           68******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.432180207IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057180206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5182205IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4184207IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4184205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5164412.461232315IPR025605OST-HTH/LOTUS domain
PfamPF128721.5E-15232311IPR025605OST-HTH/LOTUS domain
CDDcd124585.78E-33340406No hitNo description
SuperFamilySSF549284.3E-8356421IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3304.2E-6356413IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDFSDSTRVV FSRIRELEPE LVTKIIGYLL LQDNGDREMI RLAFGPDNLI HSLVNKAKTE  60
LGLSKPSPSS PSQANQQPLS DHPLHFTSYT PASARAAFPP PTLITPNHYW DHQLSAADLQ  120
PLYPDSVAED FHLQNQLQLL RLEDSLESAS SVSADHVSNY YYTEPALGLR QSRRSPSLPE  180
FPVKICHYFN KGFCKHGSNC KYYHGHHSPD SFPHHHVFSD FSNDDHAISP GSLEKLEMEI  240
TELLRSRRGC PVSIASLPMM YYEKYGRSLQ AEGYLTESQR HGKTGYSLTK LLARLKNSIR  300
LLDRPHGQHS VILAEDAPRY LEHGGDKNEP GGIVSGSRQI YLTFPAESTF TEQDANSKYG  360
PVQDVRIPCQ QKRMFGFVTF VYQETVKEIL GKGNPHFVCG ARVLVKPYRE KSRLVDRKPS  420
MSDNEQAFEV DRRCFSEMNY AAKSLSNHSI YSYSMDELKI PDAGAEQAEF PTVEGFSYFF  480
DALNNSSNIE ETRLGHIRTN YSDHQDSSQG VNLPESPFAQ AIGSSISTVT *
Functional Description ? help Back to Top
Source Description
UniProtPossesses ribonuclease activity in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898755.10.0zinc finger CCCH domain-containing protein 18
SwissprotQ9SJ411e-166C3H18_ARATH; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A2P5ESG70.0A0A2P5ESG7_TREOI; Splicing factor-like protein
STRINGXP_010112769.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]