PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011277.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 349aa MW: 37541.6 Da PI: 7.9869

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011277.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.3	3e-37	36	93	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +kcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk k++ HL.SW.v1.0.G011277.1 36 APQKCPRCESLNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRA 93 6789**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	37	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	37	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.295	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MQSEKDQSND QGKVMMMMKQ NNGNSSNDNS NGNDKAPQKC PRCESLNTKF CYYNNYSLSQ 60 PRFFCKTCRR YWTQGGTLRN VPVGGGCRKG KRARTASTTT TAISANMAST SSTTSSSEGG 120 GDNSRQVSQA PGAGGGGGAG VVLPRQNQTN PQSIIGSGLM RPVEPFGSQF FQGAGSYLPS 180 FADMNNIQSF NHGGGHDDHH NPLSHQLAEL ITAPSASTLS LLEGFNFAAF GSQQHHQQQQ 240 HQHQHQIPPS HQFFDASDHH QTMINNRPVV NSNNNHQWTH PSFGAHVNND SETTPNHSTV 300 DWTIGAANNS TAGNVHTSTT TSGDVPSNSN HRWPTTHHDL SGSYGPPP*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MQSEKDQSND QGKVMMMMKQ NNGNSSNDNS NGNDKAPQKC PRCESLNTKF CYYNNYSLSQ  60
PRFFCKTCRR YWTQGGTLRN VPVGGGCRKG KRARTASTTT TAISANMAST SSTTSSSEGG  120
GDNSRQVSQA PGAGGGGGAG VVLPRQNQTN PQSIIGSGLM RPVEPFGSQF FQGAGSYLPS  180
FADMNNIQSF NHGGGHDDHH NPLSHQLAEL ITAPSASTLS LLEGFNFAAF GSQQHHQQQQ  240
HQHQHQIPPS HQFFDASDHH QTMINNRPVV NSNNNHQWTH PSFGAHVNND SETTPNHSTV  300
DWTIGAANNS TAGNVHTSTT TSGDVPSNSN HRWPTTHHDL SGSYGPPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5AMS4	1e-102	A0A2P5AMS4_PARAD; Zinc finger, Dof-type

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-31	Dof family protein