PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011564.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 497aa MW: 57271.2 Da PI: 7.772

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011564.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.4	1.3e-14	53	137	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y+ Y+k+ GF +k++s++s n++++ f Cs+ k +++k++ ++++ +t+Cka+++ ++ dgk ++++++leHnH l+p HL.SW.v1.0.G011564.1 53 YKLYGKQEGFGAKKKTSRNS-PNENMKFVCFSCSRARKLQPTKQN---PLIPNPQMKTNCKARINATEFGDGKCKINSVVLEHNHCLSP 137 99***********99999.66779999****99999888...899********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-11	53	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-24	247	324	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSLEEKSIGL SSDASDESLS EDKGENTIDL NESVSTPTIG MNFDSLDALF LHYKLYGKQE 60 GFGAKKKTSR NSPNENMKFV CFSCSRARKL QPTKQNPLIP NPQMKTNCKA RINATEFGDG 120 KCKINSVVLE HNHCLSPHKS RFYTCNREIG IGVQRKLELN DRAGVSMAKK FQTLVVKVGG 180 HDKVPFLEKN CRNFVDKARH LCLGIGDAKA IHDYFMSMQA KNLGFFYMID FDDDSRSRTL 240 YQEFGYVVTF DTTYLTNKYD LPFAPFVGVN HHGHSIFLGC GLLSNEDTST FIWLFKTWLV 300 CMNECAPAAI ITDQATSMKN AIEVIPGKLR GYNAYEQIKN VLKNVVYDSL AIEEFEEKWG 360 QFLKEFNLSE NVWLIILYKE RHRWDPAFVK DIFWAGMSTT QRSESMNSFF DDYFKELQQK 420 LTGKLYCNVS CNGENDGVFD VIETLFVGDK RKEVSFKVQF NKEKCEYILP RWRKDIKRCH 480 SRINVNYNDW SENYETK

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSLEEKSIGL SSDASDESLS EDKGENTIDL NESVSTPTIG MNFDSLDALF LHYKLYGKQE  60
GFGAKKKTSR NSPNENMKFV CFSCSRARKL QPTKQNPLIP NPQMKTNCKA RINATEFGDG  120
KCKINSVVLE HNHCLSPHKS RFYTCNREIG IGVQRKLELN DRAGVSMAKK FQTLVVKVGG  180
HDKVPFLEKN CRNFVDKARH LCLGIGDAKA IHDYFMSMQA KNLGFFYMID FDDDSRSRTL  240
YQEFGYVVTF DTTYLTNKYD LPFAPFVGVN HHGHSIFLGC GLLSNEDTST FIWLFKTWLV  300
CMNECAPAAI ITDQATSMKN AIEVIPGKLR GYNAYEQIKN VLKNVVYDSL AIEEFEEKWG  360
QFLKEFNLSE NVWLIILYKE RHRWDPAFVK DIFWAGMSTT QRSESMNSFF DDYFKELQQK  420
LTGKLYCNVS CNGENDGVFD VIETLFVGDK RKEVSFKVQF NKEKCEYILP RWRKDIKRCH  480
SRINVNYNDW SENYETK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015893354.1	1e-165	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_024923569.1	1e-165	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	M5VTQ1	1e-151	M5VTQ1_PRUPE; Uncharacterized protein (Fragment)
STRING	EMJ00283	1e-152	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-67	FAR1 family protein