PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011673.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 353aa MW: 39020.4 Da PI: 8.9657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011673.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H HL.SW.v1.0.G011673.1 105 YECKTCNRSFPSFQALGGHRASH 127 99**********99999998887 PP
2	zf-C2H2	13	0.0003	206	228	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H HL.SW.v1.0.G011673.1 206 HECSICGAEFTSGQALGGHMRRH 228 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.9E-13	104	129	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.741	105	132	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.65E-8	105	127	No hit	No description
SMART	SM00355	0.06	105	127	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.65E-8	201	228	No hit	No description
Pfam	PF13912	5.3E-13	205	230	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	206	228	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	206	233	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEAAPPQEEV ITTASNKEQS LVVKGKRTKR QRPQSPLPFA AIATNSSAGN SGGSSDNDDN 60 PHHHNHNHRH HNQNDKHSHN RKFLEATQAA AAVNKAGAGY NNYAYECKTC NRSFPSFQAL 120 GGHRASHKKP KTMVADQTAE NKRNHLFGLP SDDEDQTQFK TSNNNNNNSS TALSLQLSNN 180 RSSTINSNNN NLYGSTNFVN KASKVHECSI CGAEFTSGQA LGGHMRRHRA PVAGSTTSTA 240 LSLTASANTP PTTTQLMSLD HHHHHHQPQH QSDLDHEQRQ QPQHHRLHQH QQHQTNKTRS 300 VLSLDLDLNL PAPEDDQREL KFGYVAKQQQ QQQQQQSSTL VFSAPALVDC HY*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEAAPPQEEV ITTASNKEQS LVVKGKRTKR QRPQSPLPFA AIATNSSAGN SGGSSDNDDN  60
PHHHNHNHRH HNQNDKHSHN RKFLEATQAA AAVNKAGAGY NNYAYECKTC NRSFPSFQAL  120
GGHRASHKKP KTMVADQTAE NKRNHLFGLP SDDEDQTQFK TSNNNNNNSS TALSLQLSNN  180
RSSTINSNNN NLYGSTNFVN KASKVHECSI CGAEFTSGQA LGGHMRRHRA PVAGSTTSTA  240
LSLTASANTP PTTTQLMSLD HHHHHHQPQH QSDLDHEQRQ QPQHHRLHQH QQHQTNKTRS  300
VLSLDLDLNL PAPEDDQREL KFGYVAKQQQ QQQQQQSSTL VFSAPALVDC HY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103498.1	2e-74	zinc finger protein ZAT5
TrEMBL	A0A2P5AGK9	4e-90	A0A2P5AGK9_PARAD; TFIIH C1-like domain containing protein
STRING	XP_010103498.1	6e-74	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-33	C2H2 family protein