PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011994.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 652aa    MW: 73988.1 Da    PI: 9.1526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011994.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08464505240
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                           ++W  eE ell ++v+++++g   +W+ I+ ++g+gRt +++
  HL.SW.v1.0.G011994.1 464 KPWGREEIELLRKGVQKFPKGtsrRWEVISDYIGTGRTVEEI 505
                           68************************************9886 PP
2Myb_DNA-binding292.4e-09594637344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                            W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++
  HL.SW.v1.0.G011994.1 594 VWSAVQERALVQALKTFPKDanqRWERVAASVP-GKTVNQCKKKF 637
                           6********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.2E-2290196IPR001623DnaJ domain
SuperFamilySSF465652.88E-2093201IPR001623DnaJ domain
SMARTSM002719.4E-1494169IPR001623DnaJ domain
PfamPF002261.3E-1895174IPR001623DnaJ domain
PROSITE profilePS5007618.7995177IPR001623DnaJ domain
CDDcd062574.23E-1395166IPR001623DnaJ domain
PRINTSPR006254.1E-10100118IPR001623DnaJ domain
PRINTSPR006254.1E-10118133IPR001623DnaJ domain
PRINTSPR006254.1E-10149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.602.8E-5458506IPR009057Homeodomain-like
SuperFamilySSF466892.17E-7460506IPR009057Homeodomain-like
PROSITE profilePS512936.797461516IPR017884SANT domain
SMARTSM007171.8E-6462515IPR001005SANT/Myb domain
PfamPF002499.7E-7464505IPR001005SANT/Myb domain
CDDcd001677.41E-5465505No hitNo description
PROSITE profilePS5129310.16590645IPR017884SANT domain
SMARTSM007172.3E-9591643IPR001005SANT/Myb domain
SuperFamilySSF466896.65E-9593647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-5593639IPR009057Homeodomain-like
PfamPF002496.8E-8594638IPR001005SANT/Myb domain
CDDcd001676.16E-7595641No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MEVRSNLRRI LYSQELVDGK PIQVSSNCLP IQASKYEPAG HSFHHVALKL RGHVEKVVDD  60
GDKKVADEKE QTSLPSDSYS SKGKKKSGAE DSQQDHYALL GLANLRYLAT EDQIKKSYRE  120
TALKYHPDKQ AALLLAEETE AAKQAKKDEI ESHFKSIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPSFGDDKT PINEVDSFYN FWYTFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLSE KARKEETARI RTLVDNAYKK DPRIQRRKEE  300
EKAEKQRKKE AKYLAKKLQE EEAVRAAEEE KRRKEEEDKR AAEVALQQRK VKEKEKKLLR  360
KERARLRTLS GSVVTQKSFS ISADDVESLC MSLNTEQLRN LCEKMEGKGP LEMAEVLRDA  420
LGYSSNLETR KEDQKKAETQ NGSVDTNGTT PGTIPFSSSE KKEKPWGREE IELLRKGVQK  480
FPKGTSRRWE VISDYIGTGR TVEEILKATK TVLLQKPDSA KAFDSFLEKR KPAPSIASPL  540
TTREEAGVSI PQATENGTAP TEAPQDLPNG GANTQSPNDS SAVNGVTSSS DQDVWSAVQE  600
RALVQALKTF PKDANQRWER VAASVPGKTV NQCKKKFAVM KDRFRSKKTA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A8e-1919129520124Zuotin
5dje_B8e-1919129520124Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020843.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2P5CY230.0A0A2P5CY23_TREOI; Octamer-binding transcription factor
STRINGXP_010095609.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain