PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G011998.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 150aa    MW: 16913.5 Da    PI: 7.5166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G011998.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3382.8e-12651223896
                           EEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3  38 ledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           + + +g++W++ +  +++      + + W++F+++n+Lk gD +vF+l+++s+++lv++v
  HL.SW.v1.0.G011998.1  65 VLTYKGKKWTMLF--NGTNVVmKRFDNSWRNFAEDNKLKIGDACVFELTENSSRNLVFRV 122
                           56779********..44442235577***********************99999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-1428126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1328126IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1330126No hitNo description
PROSITE profilePS5086311.43432128IPR003340B3 DNA binding domain
SMARTSM010194.6E-436128IPR003340B3 DNA binding domain
PfamPF023622.1E-1064122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSNTSSNLST SNEEEQVSQD DEFWPLSGKP FFSVFIAKTH VKPTYRLVLP TKIHPVLPSL  60
IIPAVLTYKG KKWTMLFNGT NVVMKRFDNS WRNFAEDNKL KIGDACVFEL TENSSRNLVF  120
RVQILRGDIP SELLPKIVGE SLESPIVIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097681.16e-58B3 domain-containing protein Os04g0386900
TrEMBLA0A2P5DI436e-64A0A2P5DI43_TREOI; B3 DNA binding domain containing protein
STRINGXP_010097681.12e-57(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-08B3 family protein