PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012687.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 214aa    MW: 23566.6 Da    PI: 10.3052
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012687.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.71.7e-15105195999
                 NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                           + e+ +d k +++P+ ri++i+++d+   +i+ ea  l+ ka e fi ++   ++  a + ++++l    +++av++ + +dfl d vp
  HL.SW.v1.0.G012687.1 105 EPEEGEDAKMNKFPMERIRRIVRSDDSDMRITNEAVFLVNKATEKFIENFCGEAYACAIKDRKKSLAYKHLSSAVSKQKRYDFLSDFVP 193
                           46788999********************************************************************************9 PP

                 NF-YC  98 rd 99 
                           ++
  HL.SW.v1.0.G012687.1 194 EK 195
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.58E-1977188IPR009072Histone-fold
PfamPF008082.8E-17116179IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.5E-24117194IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASSKKSVSE NNTPAATQTK RKKKTAGSAN AKKNDNTTTK TKTKTKTNTL SINGTVNYDE  60
VPATPSSSSD SHPAVENGVV ITKNVTSVTK SNNGKQKGKR ERKEEPEEGE DAKMNKFPME  120
RIRRIVRSDD SDMRITNEAV FLVNKATEKF IENFCGEAYA CAIKDRKKSL AYKHLSSAVS  180
KQKRYDFLSD FVPEKVKAVD ALAERKLLEA EAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2byk_A1e-131021985102CHRAC-16
2byk_C1e-131021985102CHRAC-16
2bym_A1e-131021985102CHRAC-16
2bym_C1e-131021985102CHRAC-16
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890660.11e-61DNA polymerase epsilon subunit 4
TrEMBLA0A2P5DEY05e-80A0A2P5DEY0_PARAD; Transcription initiation factor
STRINGXP_008358413.11e-60(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-23nuclear factor Y, subunit C10