PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013013.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 312aa    MW: 34488.1 Da    PI: 8.3592
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013013.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.1e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G013013.1 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding53.17.5e-1767111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++T+ Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  HL.SW.v1.0.G013013.1  67 RGNFTEIEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.586961IPR017930Myb domain
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2913108IPR009057Homeodomain-like
PfamPF002494.4E-161461IPR001005SANT/Myb domain
CDDcd001672.49E-111661No hitNo description
PROSITE profilePS5129427.17862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2765117IPR009057Homeodomain-like
SMARTSM007179.1E-1766114IPR001005SANT/Myb domain
PfamPF002494.4E-1567111IPR001005SANT/Myb domain
CDDcd001676.01E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0090378Biological Processseed trichome elongation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEIEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLISQG  120
LDPQTHRHLN ETAGDVAGAG PGAAALDFRN GSPAALPVAE INLMAEARQR KATVAPPNKS  180
VKESITETVL EDTNYCTSSG TTTEDDQRPE KEKPVFVQDQ RPVLNLELSI GIGPFQSRDT  240
AQSKLVHIIP QHQLFNGALQ SPNTAAVAAA VVSQSHGAVC LCCHLGYQAN ELCRNCQSTN  300
SFYRFHMPLD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00053PBMTransfer from AT1G22640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104477.11e-136transcription repressor MYB6
SwissprotQ9S9K92e-94MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2P5CWF21e-153A0A2P5CWF2_PARAD; MYB transcription factor
TrEMBLA0A2P5EHK41e-147A0A2P5EHK4_TREOI; MYB transcription factor
STRINGXP_010104477.11e-136(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-96myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]