PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013166.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 332aa    MW: 38144.8 Da    PI: 7.9457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013166.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-31461682127
                   NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           p+ frF+Pt eel+++ L+ k++gk+ el+++i+e+ +i+k+ePw+Lp   k++ ++ ew+f ++ d k+++++r+nr tk+g Wk tg
  HL.SW.v1.0.G013166.1  46 PKWFRFKPTGEELITR-LNLKTQGKESELDSHIAEIdHICKWEPWELPFmsKMDPNNGEWWFLCRPDYKNSHSNRSNRRTKTGHWKITG 133
                           6669**********55.9***********999****66**********5235555667******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           k++++++      g k++Lvfy+g +p  ++tdWv+hey 
  HL.SW.v1.0.G013166.1 134 KERNIKD----CNGRKRILVFYEGPSPG-KRTDWVLHEYY 168
                           *****99....6799*******987775.9********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-3144191IPR003441NAC domain
PROSITE profilePS5100535.87345191IPR003441NAC domain
PfamPF023651.1E-1447167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MHHSTRGYEQ IQYNRERNPT HKNRTYFLIV TKLGEKRKMS DNAPVPKWFR FKPTGEELIT  60
RLNLKTQGKE SELDSHIAEI DHICKWEPWE LPFMSKMDPN NGEWWFLCRP DYKNSHSNRS  120
NRRTKTGHWK ITGKERNIKD CNGRKRILVF YEGPSPGKRT DWVLHEYYSL QPNISVSLQK  180
PAYVICRLKR KYHEKGDTPD CSECELSPTS EMASDLGNSL VSAPTTPVNN FISSPQHQLC  240
SPELCNIVQA LFDEDMPEFS CDKIEKCYGE FLNLVSAHPG EYNSGETNIT YNSPNMSDSS  300
KSSYVDGPVS NDTHTIGVKE RVNHHRSLAV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-194519117165NO APICAL MERISTEM PROTEIN
1ut4_B9e-194519117165NO APICAL MERISTEM PROTEIN
1ut7_A9e-194519117165NO APICAL MERISTEM PROTEIN
1ut7_B9e-194519117165NO APICAL MERISTEM PROTEIN
4dul_A9e-194519117165NAC domain-containing protein 19
4dul_B9e-194519117165NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0949701e-135EU094970.1 Humulus lupulus clone GT5-C1-17 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BKY67e-76A0A2P5BKY6_PARAD; NAC domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1985225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-35NAC 014