PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013308.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 432aa    MW: 47120.3 Da    PI: 7.5133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013308.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.88.9e-09109129526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+++ + G C yGd+CkF H+
  HL.SW.v1.0.G013308.1 109 VCNYWIQ-GNCTYGDKCKFLHS 129
                           6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8832248IPR000571Zinc finger, CCCH-type
SMARTSM003561.52247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7105129IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6106130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-7108125IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-6109129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.7E-17126243IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.0E-6135174IPR001680WD40 repeat
SuperFamilySSF509783.2E-47136423IPR017986WD40-repeat-containing domain
PfamPF004001.8E-5138174IPR001680WD40 repeat
PROSITE profilePS5029421.305142391IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.619142183IPR001680WD40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
PRINTSPR003206.4E-6161175IPR020472G-protein beta WD-40 repeat
SMARTSM003206.5214251IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.1E-32244423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.7E-4258295IPR001680WD40 repeat
PfamPF004000.0019260295IPR001680WD40 repeat
PROSITE profilePS5008211.812265304IPR001680WD40 repeat
PRINTSPR003206.4E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0019298335IPR001680WD40 repeat
PfamPF004000.0027300334IPR001680WD40 repeat
SMARTSM003201.1339382IPR001680WD40 repeat
PRINTSPR003206.4E-6369383IPR020472G-protein beta WD-40 repeat
SMARTSM003200.49385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDVDGGGNKR VFQRLTGPST DSKHQKVCYH WRAGKCNRFP CPFLHRELHP PAVHPPNGTA  60
PSSSKRHHAF AASAEDHSGP RRGPHNNTWG RVHGGNVGGN KFVRKTDKVC NYWIQGNCTY  120
GDKCKFLHSW TMGDGFSLLT QLEGHQNVVT GIALPSGSDK LYTGSKDETV RIWDCQSGQC  180
TAVIQLGCEV GCMISEGPWI FVGILNMVKA WNTQTNTESS LTGPVGQVYS LVVGNELLFA  240
GIQDGSILVW KFNVATNCFE PLTSLKGHSL PVVSLVVGAN RLYSGSMDHS IKVWSLETLQ  300
CLQTLTDHNA VVMSVLCWDQ FLLSCSLDQT IKVWVSSQNG GLEVTYTHNE EHGVLALCGM  360
HDSEGKPVLL SSCNDNSVRL YDLPSFSERG KFFSKQEVRS IQVGPGGLFF TGDGTGQVRV  420
WNMLADTAST A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221304235323Tako8
6g6n_A4e-221304235323Tako8
6g6n_B4e-221304235323Tako8
6g6n_C4e-221304235323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024028274.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P5D9H10.0A0A2P5D9H1_PARAD; Guanine nucleotide-binding protein, beta subunit
STRINGXP_008234304.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1