PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013394.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 248aa    MW: 28052.7 Da    PI: 5.4945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013394.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-1358100754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  HL.SW.v1.0.G013394.1  58 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 100
                           57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.59651100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1852115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-1354105No hitNo description
Gene3DG3DSA:4.10.280.108.1E-1757118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MENIGEEYNH YWETTMFLQT EELDHSWGGG LEDAAFSGDY DSSSPDGAAS SAASKNIVSE  60
RNRRKKLNER LFALRAVVPN ISKMDKASII KDAIEYIQEL HEQERRIQAE IIELESNNKG  120
SKKNLGYDFD QELPILLRSK KKKIDQQPYD SSGSRCSGSI SPIEDLELRV TYMGEKTLVV  180
SLTCSKRTDT MVKLCEVFES LKLKIITANI TAFSGRLSKT VIIEDLSNYC IWQQKRTSDN  240
SLLPCKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-1456100953Transcription factor MYC2
5gnj_B9e-1456100953Transcription factor MYC2
5gnj_E9e-1456100953Transcription factor MYC2
5gnj_F9e-1456100953Transcription factor MYC2
5gnj_G9e-1456100953Transcription factor MYC2
5gnj_I9e-1456100953Transcription factor MYC2
5gnj_M9e-1456100953Transcription factor MYC2
5gnj_N9e-1456100953Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358594.21e-120transcription factor bHLH35-like
SwissprotQ2HIV97e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2P5EZP81e-128A0A2P5EZP8_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008358594.11e-119(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.37e-60bHLH family protein