PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013425.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 271aa    MW: 31514.2 Da    PI: 8.0615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013425.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1492.4e-46171423128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eel+++yLk+ v+gk  ++ ++i +++iy ++Pw Lp k+k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++
  HL.SW.v1.0.G013425.1  17 PGFRFHPTEEELLDFYLKNMVSGKM-RF-DIIGSLNIYLFDPWVLPDKAKIGEREWYFFVPRDRKHGSGGRPNRTTERGFWKATGSDRR 103
                           9********************9998.55.78***************99999************************************** PP

                   NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ++s    ++++gl+ktLvfykgrap+g+ktdWvm+eyrl
  HL.SW.v1.0.G013425.1 104 IVSLsePKRVIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 142
                           *997656778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5410160IPR003441NAC domain
PROSITE profilePS5100554.11115160IPR003441NAC domain
PfamPF023652.2E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MATNSMDDVT PEVLELPGFR FHPTEEELLD FYLKNMVSGK MRFDIIGSLN IYLFDPWVLP  60
DKAKIGEREW YFFVPRDRKH GSGGRPNRTT ERGFWKATGS DRRIVSLSEP KRVIGLRKTL  120
VFYKGRAPRG TKTDWVMNEY RLPDNCKLSK DIVLCKVYRK ATSLKVLEQR VQMEEEMKNF  180
QNDNSPASPM DTISFCNPHE EQLIQHALVP TSDFVLKKEV EEVVPYGYKD KLPELQVPKL  240
GLDWTQEQFW THLNSPWLQN LTPLANILNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4811654170NO APICAL MERISTEM PROTEIN
1ut4_B9e-4811654170NO APICAL MERISTEM PROTEIN
1ut7_A9e-4811654170NO APICAL MERISTEM PROTEIN
1ut7_B9e-4811654170NO APICAL MERISTEM PROTEIN
3swm_A1e-4711657173NAC domain-containing protein 19
3swm_B1e-4711657173NAC domain-containing protein 19
3swm_C1e-4711657173NAC domain-containing protein 19
3swm_D1e-4711657173NAC domain-containing protein 19
3swp_A1e-4711657173NAC domain-containing protein 19
3swp_B1e-4711657173NAC domain-containing protein 19
3swp_C1e-4711657173NAC domain-containing protein 19
3swp_D1e-4711657173NAC domain-containing protein 19
4dul_A9e-4811654170NAC domain-containing protein 19
4dul_B9e-4811654170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103318.11e-149NAC domain-containing protein 22
SwissprotQ10S658e-90NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A2P5CKD51e-167A0A2P5CKD5_TREOI; NAC domain containing protein
STRINGXP_010103318.11e-149(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-109NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]