PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013507.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 264aa    MW: 30192.9 Da    PI: 6.9
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013507.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20104153255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f++ae Aa a+++a+++++g
  HL.SW.v1.0.G013507.1 104 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDSAEAAALAYDEAALRFKG 153
                           7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32103162IPR001471AP2/ERF domain
SMARTSM003805.8E-38104167IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22104162IPR016177DNA-binding domain
CDDcd000182.60E-20104162No hitNo description
PROSITE profilePS5103224.803104161IPR001471AP2/ERF domain
PfamPF008477.3E-14104153IPR001471AP2/ERF domain
PRINTSPR003675.0E-11105116IPR001471AP2/ERF domain
PRINTSPR003675.0E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
DRRGHYGKRP FPSDQESEEK EDQEPIFPIY SARSQQDMSA MVSALARVIG SNDHIDINAD  60
HHQLRAHPPP LIGNPSFITT ADHGQSHHTL QDNDQGNNTV RRRHYRGVRQ RPWGKWAAEI  120
RDPKKAARVW LGTFDSAEAA ALAYDEAALR FKGSKAKLNF PERPTLQYGQ FADFNSNVIS  180
SSYDHNNYIP QSSSFYGSAG VVPHQYTSQQ QQELLQQQQE QEQQHNELLR LTMQFGSSNS  240
STMSDPFNRR DYDHHDSSTD RWKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-25103163162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549660.12e-54PREDICTED: ethylene-responsive transcription factor ERF114-like, partial
SwissprotQ9FH542e-49EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2P5D1M72e-65A0A2P5D1M7_PARAD; AP2/ERF transcription factor
STRINGXP_008356833.16e-54(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]