PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013529.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YB
Protein Properties Length: 230aa    MW: 25031.8 Da    PI: 6.9612
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013529.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.94.8e-5626121297
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +e+drflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv plkvyl+ky
  HL.SW.v1.0.G013529.1  26 KEHDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKY 114
                           799************************************************************************************** PP

                 NF-YB  91 relegek 97 
                           re+e+ek
  HL.SW.v1.0.G013529.1 115 REVEEEK 121
                           ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-5323140IPR009072Histone-fold
SuperFamilySSF471132.17E-4029139IPR009072Histone-fold
PfamPF008082.1E-273195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.1E-205977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.1E-207896No hitNo description
PRINTSPR006159.1E-2097115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSAKRNQTSS SGSPIGSPLS PDSSSKEHDR FLPIANVSRI MKKSLPANAK ISKEAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKVY LNKYREVEEE  120
KNSMAMVRQE ELSPTHTTTT SDHEMVHGSS SSRVAYNSFP NKVDFQDFSV GGFYSIGGPK  180
SYNGEISGMI NIGYGDNYMS GIHETGGGGH GNPNRAVVAA QLHHGNIGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4826116292Transcription factor HapC (Eurofung)
4g92_B8e-4826116292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890973.15e-96nuclear transcription factor Y subunit B-8-like
TrEMBLA0A2P5BPX91e-118A0A2P5BPX9_TREOI; Nuclear transcription factor Y subunit B
STRINGXP_010099896.14e-90(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-62nuclear factor Y, subunit B3