PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G013538.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WOX

Protein Properties

Length: 343aa MW: 39110.2 Da PI: 6.6153

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G013538.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.6e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ HL.SW.v1.0.G013538.1 88 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Homeobox	30.9	4.5e-10	197	226	28	57
HHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakekk 57 +e + L+++ +++e++V++WFqNrRa+ k+ HL.SW.v1.0.G013538.1 197 SELTNLSQHGQISETNVYNWFQNRRARSKR 226 5778999*********************97 PP
3	Wus_type_Homeobox	100.8	9.7e-33	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq HL.SW.v1.0.G013538.1 87 ARQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP
4	Wus_type_Homeobox	44.7	3.1e-15	199	228	36	65
Wus_type_Homeobox 36 taeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++L+++G+i+++NV++WFQNr+aR+++kq HL.SW.v1.0.G013538.1 199 LTNLSQHGQISETNVYNWFQNRRARSKRKQ 228 468*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-18	83	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.981	84	149	IPR001356	Homeobox domain
SMART	SM00389	1.8E-14	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-18	87	152	IPR009057	Homeodomain-like
CDD	cd00086	1.04E-12	88	150	No hit	No description
Pfam	PF00046	5.3E-19	88	148	IPR001356	Homeobox domain
SMART	SM00389	0.0032	169	231	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-8	178	230	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.928	196	227	IPR001356	Homeobox domain
CDD	cd00086	1.16E-5	196	228	No hit	No description
Pfam	PF00046	1.7E-7	197	226	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.71E-8	199	229	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMEEEEDVNV NHVNMSVNGG TAIPYVKVMT DDQLQTLRKQ IAAYATICEQ LVQMHKNLTA 60 HHDLPGVRLG NLYCDPLMTS AGHKITARQR WTPTPVQLQI LERIFDQGNG TPSKQKIKEI 120 TSDLSQHGQI SETNVYNWFQ NRRARSKRKQ QNAAPNNAES EVETDVESPK DKKTKPEEFH 180 TQHNHQSPRA DDICFRSELT NLSQHGQISE TNVYNWFQNR RARSKRKQQN VAPNNAESEV 240 ETDVESPKDK KTKPEEFHAQ HNHQSPRADD ICFRSELSSD LHFFDPPTNK GETIFPSNTG 300 LRPARNLSQM PFYDGNEHLS GKMEVPGSYS LYEHGDEYNM AG*

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMEEEEDVNV NHVNMSVNGG TAIPYVKVMT DDQLQTLRKQ IAAYATICEQ LVQMHKNLTA  60
HHDLPGVRLG NLYCDPLMTS AGHKITARQR WTPTPVQLQI LERIFDQGNG TPSKQKIKEI  120
TSDLSQHGQI SETNVYNWFQ NRRARSKRKQ QNAAPNNAES EVETDVESPK DKKTKPEEFH  180
TQHNHQSPRA DDICFRSELT NLSQHGQISE TNVYNWFQNR RARSKRKQQN VAPNNAESEV  240
ETDVESPKDK KTKPEEFHAQ HNHQSPRADD ICFRSELSSD LHFFDPPTNK GETIFPSNTG  300
LRPARNLSQM PFYDGNEHLS GKMEVPGSYS LYEHGDEYNM AG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	227	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	1e-109	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	1e-74	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2N9HSB6	1e-108	A0A2N9HSB6_FAGSY; Uncharacterized protein
STRING	XP_008241933.1	1e-102	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-75	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]