PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013647.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 414aa    MW: 46872.4 Da    PI: 7.6765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013647.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.11.5e-3257164199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+kv tpsdv+k++rlv+pk++ae++        +++ ++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  HL.SW.v1.0.G013647.1  57 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsttTEDNSKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSF 145
                           89***************************9999444558889*********************************************** PP

                           EE-.SS.SEE..EEEEE-S CS
                    B3  83 kld.gr.sefelvvkvfrk 99 
                           ++  g+  +++l++ ++r+
  HL.SW.v1.0.G013647.1 146 ERGvGEsGKGRLYIDWRRR 164
                           *665888999******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-4147166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-3153163IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-2755159No hitNo description
PROSITE profilePS5086315.11557165IPR003340B3 DNA binding domain
SMARTSM010193.1E-2557165IPR003340B3 DNA binding domain
PfamPF023626.2E-3057164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADLSLRTNY EENNINRNNN SDNNIHVLGE NSNSSTGTHG VWSCSSSSTD HQREHMFDKV  60
VTPSDVGKLN RLVIPKQHAE KYFPLDSTTT EDNSKGLLLN FEDRNGKSWR FRYSYWNSSQ  120
SYVMTKGWSR FVKEKKLDAG DIVSFERGVG ESGKGRLYID WRRRPHHQHL GHHHHHQQYH  180
HHHHALQSPN PGSLITPLVQ FATDHHHHQF PWGGGGGSGR RGGEGLFYSL PSGISMPMPP  240
LHHENLRYNY NNSVHYPHYN HNHNHNHQQQ QHQQHQYYHS PSTTTGIRPG GINDNNLIPV  300
VFESTPAAVI GDYPGKLSSP PSASSKRLRL FGVNMEYCPE GQEEVEESIE GVTMASSANH  360
HQLPASSNLV QYSPHEHQVR LPNHHSQMPI TIPAEFISRK GKSSSLSFDL DPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-64531654114B3 domain-containing transcription factor NGA1
5os9_B2e-64531654114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107127.11e-102B3 domain-containing protein Os03g0120900
TrEMBLA0A2P5BKY51e-139A0A2P5BKY5_PARAD; B3 DNA binding domain containing protein
STRINGXP_010107127.11e-101(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-64B3 family protein