PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013784.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 367aa    MW: 40976.1 Da    PI: 8.0958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013784.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181563148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l+d+++q+G + +Wk+ ++  g+ R++k+c++rw++yl
  HL.SW.v1.0.G013784.1 15 KGPWTPEEDKKLIDYIEQHGHHgSWKSLPKLAGLIRCGKSCRLRWNNYL 63
                          79******************99**************************7 PP
2Myb_DNA-binding56.75.5e-1869114148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++++eE+  +++++  lG++ W++Ia++++ gRt++++k++w++yl
  HL.SW.v1.0.G013784.1  69 RGKFSEEEERTIINLHSALGNR-WSKIASHLP-GRTDNEIKNFWNTYL 114
                           89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2181063IPR017930Myb domain
SuperFamilySSF466892.47E-2912110IPR009057Homeodomain-like
SMARTSM007171.6E-131465IPR001005SANT/Myb domain
PfamPF002491.4E-161563IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241670IPR009057Homeodomain-like
CDDcd001673.85E-111763No hitNo description
PROSITE profilePS5129427.92464118IPR017930Myb domain
SMARTSM007175.2E-1868116IPR001005SANT/Myb domain
PfamPF002495.1E-1769114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-2771118IPR009057Homeodomain-like
CDDcd001675.89E-1371114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRSPCCDGI IGLKKGPWTP EEDKKLIDYI EQHGHHGSWK SLPKLAGLIR CGKSCRLRWN  60
NYLRPDIKRG KFSEEEERTI INLHSALGNR WSKIASHLPG RTDNEIKNFW NTYLRKKLLQ  120
MGIDPHTHKP RTDLNHLINL SQMLSQSHLT NFIMNTATAP TPPWPNALKL QADVAHQYMA  180
KIQLLQNLMQ VMNSSNIMNS SNNATPNIDN TSSPSTVLST APNYNVKPFE APKDCYEIKN  240
QLGRVPYGPS HSQALNPNFL ECREIGSGGG GGELGSHELQ KNSAKFDDGS VHYNEIFYQL  300
PGLVSEPFTG SCISTNFTEN KSAYSATTSF GHSSSSPTST VSEAWDKIMH DQTSESYWKD  360
ILELMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2991181108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024173796.11e-111transcription factor MYB39-like
TrEMBLA0A2P5EPK81e-128A0A2P5EPK8_TREOI; MYB transcription factor
STRINGXP_004301783.11e-105(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-79myb domain protein 9