PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013802.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 667aa    MW: 74498.7 Da    PI: 10.5353
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013802.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081042235
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgR 35
                          ++W t E++ll++av+++G+++W++Ia ++  +R
  HL.SW.v1.0.G013802.1 10 QPWGTLEELLLACAVNRHGTKSWDSIAMELA-NR 42
                          79*************************9987.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-5875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-5944IPR009057Homeodomain-like
PfamPF002492.4E-71042IPR001005SANT/Myb domain
CDDcd001671.96E-41173No hitNo description
SMARTSM002974.3E-15281390IPR001487Bromodomain
SuperFamilySSF473709.29E-17285386IPR001487Bromodomain
Gene3DG3DSA:1.20.920.109.4E-15289384IPR001487Bromodomain
CDDcd043699.34E-15292384No hitNo description
PfamPF004391.2E-11294376IPR001487Bromodomain
PROSITE profilePS5001412.002300371IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAREHETSVQ PWGTLEELLL ACAVNRHGTK SWDSIAMELA NRINTGGGAN GGGGAASVYL  60
TPDNCKDRFD ELKRRFMSRN DDEPTSLVPM VDELKKIRVE ELRREVRRRD VSIVSLELKV  120
KRLEEERERS LKETEDDSRK NIEEGERRLS SPENRAGKSN SGDASDSRDR ENRSYNESNS  180
TTQKRDSRRN GVVKGETEPE PERNELDPPR TESEPGKVVD GDENETMARE DNAKQSSDVQ  240
SSMSLSKNKR RRKGSGSGGA AAAVSSSGEE PEGGDEVSPA TKRVSALKSE PLVKLLGTIR  300
SHRLGSVFQR RLRSQESQRY KNLIRQHLDL RTIEARLDKG LYLNGFHKFF RDLLLLFNNA  360
VVFFRKSSPE YAAAQELRAL VLKETNAKVG KARPFTPKLE KTKQESDHSA PAPKSNKSSS  420
IIVTCGKRSK SVSEGVIISK KGENNKDRAV VVEEKQEKKI NNSSNSSSFV TIDEKGVKKK  480
RSQERGARRN EHEFGGNELS SHDALEVNKK DNAKKKQGVA NFLKRMKQNS DNHNNHNNNI  540
INNNNNTDVS DDDIISSEEE DSKVEKKEKT KKKMMKKNGS NGGGRNNNIK PDERQERVTR  600
NSTRTKDEGR KTRRGVGRPP KKPEKASKTT TTTATAATTG GGNKRARDNS EPDVGVGGRL  660
KKRSRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020531.10.0uncharacterized protein LOC21401380
TrEMBLA0A2P5FU450.0A0A2P5FU45_TREOI; Octamer-binding transcription factor
STRINGXP_010087384.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-30DNA-binding bromodomain-containing protein