PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014006.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 260aa    MW: 29770 Da    PI: 6.5066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014006.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1756105255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y GVr+++ +grWvAeI+d    +++ r +lg+f+t+e+Aa a+++a++ l+g
  HL.SW.v1.0.G014006.1  56 RYLGVRQRP-SGRWVAEIKDS---NQKLRLWLGTFDTPEDAALAYDRAARLLRG 105
                           689******.7*********3...246***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.96E-3256115No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2956114IPR001471AP2/ERF domain
SMARTSM003803.5E-3556119IPR001471AP2/ERF domain
PfamPF008471.1E-1156105IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2056113IPR016177DNA-binding domain
PROSITE profilePS5103220.63956113IPR001471AP2/ERF domain
PRINTSPR003671.4E-75768IPR001471AP2/ERF domain
PRINTSPR003671.4E-77995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDIIEINSNI PFDSQIPCSS HSPKLYIEPE KFHDSEDHSS MPPKRSVVLK NRVQRRYLGV  60
RQRPSGRWVA EIKDSNQKLR LWLGTFDTPE DAALAYDRAA RLLRGRNAKT NFPNLGIMST  120
CEENFDILGK NNPRLYQLLQ QAVMKNKAKN NFCNMNIPLW NNNNDYNMGE VLDQYFDSSV  180
YNDFDTLVEE TIVCSSSNYD YDYRDNHDHD HEHDHDQRDN KKNSNKLCSS NNSTTISLGS  240
SKVYSSVVVA PSFSASNQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1755113160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1755113463ATERF1
3gcc_A2e-1755113463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106804.14e-67ethylene-responsive transcription factor ERN1-like
TrEMBLA0A2P5F4L71e-125A0A2P5F4L7_TREOI; AP2/ERF transcription factor
STRINGXP_008393384.11e-65(Malus domestica)
STRINGEMJ122502e-65(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-17related to AP2 11