PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014035.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 209aa    MW: 23367.2 Da    PI: 4.8282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014035.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-191563355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a++ l+g
  HL.SW.v1.0.G014035.1 15 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAALHLRG 63
                          9****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.3271471IPR001471AP2/ERF domain
SMARTSM003801.1E-361477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-311572IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-221572IPR016177DNA-binding domain
PfamPF008471.5E-121563IPR001471AP2/ERF domain
CDDcd000181.89E-221573No hitNo description
PRINTSPR003679.7E-101526IPR001471AP2/ERF domain
PRINTSPR003679.7E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEQVILESEY GDVAYRGVRK RKWGKWVSEI REPGKKTRIW LGSYETPEMA AAAYDVAALH  60
LRGRVAHLNF PELAEALPRP ATSRPEDVQL AAQQAALRFR RESAEPMDRE VENDMSSNKS  120
ACAADIKSNG YSVPVTVGLS ASQIQAINES PLDSPKMTWM QMGAAVLGST VFFGDQYYYY  180
STSHHVCLND DVEFSDFVEI QHDSIWDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161571663ATERF1
3gcc_A3e-161571663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104523.17e-71ethylene-responsive transcription factor ERF022
TrEMBLA0A2P5D5S16e-92A0A2P5D5S1_TREOI; AP2/ERF domain containing protein
STRINGXP_010104523.13e-70(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-40ERF family protein