PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014047.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bZIP
Protein Properties Length: 202aa    MW: 22376.4 Da    PI: 8.191
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014047.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_156.18.1e-1858118363
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           ++kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN++L k+l   + ++ + ++++
  HL.SW.v1.0.G014047.1  58 DVKRIRRMVSNRESARRSRRRKQAHLADLEIQVEQLRGENSSLYKQLTDASHQCREADTDN 118
                           68********************************************999999998877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.0E-1756120IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.97858110IPR004827Basic-leucine zipper domain
PfamPF001706.4E-1558112IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-1260110No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-96097No hitNo description
CDDcd147023.91E-761112No hitNo description
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.101.6E-498127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKRERISVGS PISASNNPKG RDEQAIGATS GSSHEQSDDD IDIEAGPCEQ STDGINHDVK  60
RIRRMVSNRE SARRSRRRKQ AHLADLEIQV EQLRGENSSL YKQLTDASHQ CREADTDNRV  120
LKSDVEAMRA RVKLAETSNL NQLIQSHLNT TTSAASILAH FNTTTNSSSS TTTSNKNNPP  180
NVSPTITVHG NSNHHHHHCH HH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17279RRSRRRKQ
27479SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112149.13e-61basic leucine zipper 9 isoform X1
RefseqXP_024031675.13e-61basic leucine zipper 9 isoform X2
SwissprotQ6H5009e-48RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2P5DT351e-78A0A2P5DT35_PARAD; Basic-leucine zipper transcription factor
STRINGXP_010112149.11e-60(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-36basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]