PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014353.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 91aa    MW: 10358.5 Da    PI: 5.854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014353.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-071559345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT+   + + +a +++ ++   +W  +a+ +g  +t +++k ++q
  HL.SW.v1.0.G014353.1 15 SWTAKQNKSFERALALFDKDtpdRWQNVAKAVG-DKTVEEVKIHYQ 59
                          7********************************.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.144862IPR017877Myb-like domain
SMARTSM007172.0E-51264IPR001005SANT/Myb domain
SuperFamilySSF466892.61E-121470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-41565IPR009057Homeodomain-like
PfamPF002491.7E-51559IPR001005SANT/Myb domain
CDDcd001675.10E-51562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MASSSLNKQS YYSSSWTAKQ NKSFERALAL FDKDTPDRWQ NVAKAVGDKT VEEVKIHYQI  60
LLDDLRQIES GRVPIPNYKF TNLDEEQSST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-3016821177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027356368.16e-41protein RADIALIS-like 4
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P5C9V51e-46A0A2P5C9V5_PARAD; Octamer-binding transcription factor
TrEMBLA0A2P5EKG01e-46A0A2P5EKG0_TREOI; Octamer-binding transcription factor
STRINGXP_010088931.12e-40(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.17e-34RAD-like 6