PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014435.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 365aa    MW: 41281.8 Da    PI: 5.1131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014435.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.2e-28136196259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+r++edp ++eitY+g+H ++
  HL.SW.v1.0.G014435.1 136 DDGYSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRTDEDPYLFEITYRGTHSCS 196
                           8**************************998889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-28129197IPR003657WRKY domain
PROSITE profilePS5081121.918130194IPR003657WRKY domain
SuperFamilySSF1182902.62E-25134197IPR003657WRKY domain
SMARTSM007748.0E-38135197IPR003657WRKY domain
PfamPF031067.4E-26136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEGNWGWEQK ILIGELIHGM ELAKQLKQNL SAKSSPEARE FLVQRILSSY EKALSILKWS  60
GGSMGQQQQP PLGVATSFSL PESPISNNAS PQSENFDRPF KDNQDLRDVS KKRKTMPRWT  120
DQVRVSSENG LEGPQDDGYS WRKYGQKDIL GAKYPRSYYR CTFRNTQNCW ATKQVQRTDE  180
DPYLFEITYR GTHSCSQAGN SVQPPKSPEK QDQKPNNQNM IPQQQQFEQS NPKFQSNLRV  240
ITDELGFREV MESPFSFPSS SYGCMKSEDS FTPLVLDNDT FLGGFSQSFV SPATPESNYY  300
PLSPFQMSSP TAFHNVQRSE SDHTEIISAN NSVTNSPIPE MNFSLDLVNN DPNFPLTLLD  360
FSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-18136195968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113LRDVSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104968.11e-179probable WRKY transcription factor 53
TrEMBLA0A2P5EAA80.0A0A2P5EAA8_TREOI; WRKY domain containing protein
STRINGXP_010104968.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-67WRKY family protein