PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G014664.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 415aa MW: 44771.1 Da PI: 9.3017

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G014664.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.5e-39	99	159	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ HL.SW.v1.0.G014664.1 99 PETALKCPRCQSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTK 159 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-34	83	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-32	102	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.404	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MVFSSIPVYL DPPNWHVQVL FPQQQNHQQY QQQQQQQQQI SRVLSAESGG QLPPLPPPGQ 60 LPPHHVGGGT SDSLSGAGTG SIRPGSMADR ARLAKIPQPE TALKCPRCQS TNTKFCYFNN 120 YSLTQPRHFC KTCRRYWTRG GALRNVPVGG GCRRNKKTKS SNNSNNNNSN NRRSKSPVGN 180 SGDQNKQTAA GSSSSTSTGG GLISPSAEMI CHLQQVPQLG HNNSSFLASM QNLTRFGSGN 240 LGLNFTTNDQ IQAAAGATDL GFQIGSEVDQ WRLQQFPLLG GHHDFESPAT GNLYPFQGCS 300 STSDHHQQGN NGMDVGDDHI SHNNNNNNNN MLFRSNMSSS SGSRVSQFIP PVKIEDHRSQ 360 LGGGGLNLLR PNLGLSSENN NHNYWGPSGN TSSSPWTDLS ALNTSNTSTT HPLL*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MVFSSIPVYL DPPNWHVQVL FPQQQNHQQY QQQQQQQQQI SRVLSAESGG QLPPLPPPGQ  60
LPPHHVGGGT SDSLSGAGTG SIRPGSMADR ARLAKIPQPE TALKCPRCQS TNTKFCYFNN  120
YSLTQPRHFC KTCRRYWTRG GALRNVPVGG GCRRNKKTKS SNNSNNNNSN NRRSKSPVGN  180
SGDQNKQTAA GSSSSTSTGG GLISPSAEMI CHLQQVPQLG HNNSSFLASM QNLTRFGSGN  240
LGLNFTTNDQ IQAAAGATDL GFQIGSEVDQ WRLQQFPLLG GHHDFESPAT GNLYPFQGCS  300
STSDHHQQGN NGMDVGDDHI SHNNNNNNNN MLFRSNMSSS SGSRVSQFIP PVKIEDHRSQ  360
LGGGGLNLLR PNLGLSSENN NHNYWGPSGN TSSSPWTDLS ALNTSNTSTT HPLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106451.1	1e-90	dof zinc finger protein DOF3.6
TrEMBL	A0A2P5EJ95	1e-144	A0A2P5EJ95_TREOI; Zinc finger, Dof-type
STRING	XP_010106451.1	5e-90	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-41	Dof family protein