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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | HL.SW.v1.0.G014684.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family | Dof | ||||||||
| Protein Properties | Length: 328aa MW: 35690.3 Da PI: 8.4881 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 125.9 | 1.2e-39 | 57 | 118 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk++ss
HL.SW.v1.0.G014684.1 57 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRTSS 118
7899******************************************************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 4.0E-30 | 50 | 115 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 2.2E-33 | 59 | 115 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 29.134 | 61 | 115 | IPR003851 | Zinc finger, Dof-type |
| PROSITE pattern | PS01361 | 0 | 63 | 99 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 328 aa Download sequence Send to blast |
MDTAHWPQEI VVKPLEEIVT NTCPKPHHHH HHLNQVQPSS SSQGCSLERK TTTRPQKEQA 60 LNCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRTSSSS 120 PSSSPSSSKI TASRLPDLVH PHLQQHQLSQ AQDLNLGFPP MINNNSIEKH HISPSSNTSP 180 TSTTTSTTTT NNNTPTTTTT HFSALELLNG LTSRGFNSFL PIPVPDPNSN SVYNTSGFPL 240 VPEFKPSLNF SLDGLGIGST TAAAYGSLPS VHDQNNTSSS SSGRLLFPFE DLKQVSNANS 300 AGIIDQDNNK EQGDSTGYWT GMLGGGW* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KT202286 | 6e-66 | KT202286.1 Prunus dulcis dof zinc finger protein (dof) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010106133.1 | 1e-113 | dof zinc finger protein DOF4.6 | ||||
| TrEMBL | A0A2P5F524 | 1e-124 | A0A2P5F524_TREOI; Zinc finger transcription factor | ||||
| STRING | XP_010106133.1 | 1e-112 | (Morus notabilis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF674 | 34 | 137 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G24060.1 | 8e-61 | Dof family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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