PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014721.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 258aa    MW: 28378.5 Da    PI: 7.6531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014721.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18125175255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr ++ +g+++AeIrdp  ng   r++lg++ t eeAa a+++a+ k++g
  HL.SW.v1.0.G014721.1 125 HYRGVRKRP-WGKFAAEIRDPARNG--SRVWLGTYETSEEAALAYDRAAFKMRG 175
                           7********.**********97676..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.2E-32124184IPR001471AP2/ERF domain
PROSITE profilePS5103224.408125183IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-23125185IPR016177DNA-binding domain
CDDcd000181.24E-30125184No hitNo description
PfamPF008472.5E-14125175IPR001471AP2/ERF domain
SMARTSM003801.2E-38125189IPR001471AP2/ERF domain
PRINTSPR003671.7E-10126137IPR001471AP2/ERF domain
PRINTSPR003671.7E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVGEFSIPQL YPNFSSTSTA TTTTDLMFPC LTDQWGDLPL QVNDSEDMIV YNSLRDAVNL  60
GWSPSDHYLT AAAAVVKAEP HDQYYSFDQR PPAPYASEYS LPSIEPNDNN NIGSNRRSSV  120
ARGRHYRGVR KRPWGKFAAE IRDPARNGSR VWLGTYETSE EAALAYDRAA FKMRGSKALL  180
NFPHRISSGE PPPVRITAKR RESETSTTTG SGSSSKKTKV VRSLAENNDV ESKKGFSTLE  240
VGSTTSFLPL GEELLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-38121190170ATERF1
3gcc_A7e-38121190170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109127.16e-87ethylene-responsive transcription factor 2
TrEMBLA0A2P5F3R71e-93A0A2P5F3R7_TREOI; AP2/ERF transcription factor
STRINGXP_010109127.12e-86(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-59ethylene responsive element binding factor 1