PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G014993.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 306aa    MW: 35072.2 Da    PI: 10.3145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G014993.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-172233051299
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++ +l+lp++f+e+h g+k++++ l++     ++W vkl   ++ ++++++kGW+ F  an + +gD +vF +++r+ + l+v++f+k
  HL.SW.v1.0.G014993.1 223 RRYNLRLPNSFVESHLGSKTQPISLKVG---TKKWLVKL--VNCNSGFFFSKGWSAFLAANSIHTGDACVFAFMSREPAVLKVSIFKK 305
                           45679**********8888999777755...5*******..999999***************************999999***99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.572496IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-13598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.6E-13597IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0059696IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-18206304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16208304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.225212305IPR003340B3 DNA binding domain
SMARTSM010190.0025216305IPR003340B3 DNA binding domain
CDDcd100177.33E-14223304No hitNo description
PfamPF023627.2E-15225305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASLLFVRII GAEHSKMQLA LPNKFVMLYG DTLASSVSLV LPCGHTWKIG LVTEDNKIYL  60
QKDWPKFIEH YQINGQLLIF NYRGSSNFDV SIIDNSSCEL DYTLFPFNSN GKKNDTASMV  120
DLASSEESHS DNKGKFKINE ETEDDTPTKM RRRKRRHEGP YNKGKSKINE EIEDDTPTKM  180
RQRKKRHEGP YKTYKNTKAY KEASQLYSNN PLFRRIIRMK GRRRYNLRLP NSFVESHLGS  240
KTQPISLKVG TKKWLVKLVN CNSGFFFSKG WSAFLAANSI HTGDACVFAF MSREPAVLKV  300
SIFKK*
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-30B3 family protein