PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015020.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 501aa    MW: 55472.2 Da    PI: 6.7345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015020.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-085480128
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIa 28
                          r rWT+eE+ ++++a k++G   W++I 
  HL.SW.v1.0.G015020.1 54 RERWTEEEHRKFLEALKLYGRA-WRKIE 80
                          78******************88.***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-84891IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-95292IPR006447Myb domain, plants
PfamPF002496.2E-65480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-65482IPR009057Homeodomain-like
CDDcd001679.94E-55687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAMAIHDEND ASPSAGVFSS ENAISLCVKL KDQFSCGNDF CPKVRKPYTI TKQRERWTEE  60
EHRKFLEALK LYGRAWRKIE DFKSDNQTFK NIYPTTNMLE QRLRFKFEVM LKNSSIRFTA  120
LIPIPIAQDP NGSNVNTEES IEIPPPRPKR KPMHPYPRKL AHSTKEELSI PEHSTKSYLS  180
LSEQDNQSPK SVLSAMGSDT IGLSGSNTQD ESLSPVSSST GIHVGSILFS EPNSSTEDIG  240
SPPAAVKASV SSPSQLPVKL ELFSQDNACA KGTSAEIVSA RSLTLFGTIV FVADSHRPSS  300
PTMGTCKPLP SCEQEEKLAQ PLPSPVTETE SSTETAHCVW GHLPRAVQAL YLMHFQNGFP  360
NLVGSGSVTP LPLWPYYGGL PFPSNNQDQV KGSLDSNLSE VQEVNEEGSW SGSNTGSLNS  420
DKCLDADSQS RYTSLEKEEK EVSILEWKPS SRSAFSQHKI SSEKYKRGFV PYKRSRVETD  480
RQSLTMKGQE RQENRIQLCL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101053.11e-156protein REVEILLE 1
TrEMBLW9REF01e-155W9REF0_9ROSA; Myb-like protein G
STRINGXP_010101053.11e-156(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-30MYB_related family protein