PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015194.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21030.9 Da    PI: 9.6823
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015194.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.11.9e-22350249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          ++e+ s rqvtfskRr g++KKA+EL +LCd+++avi+fs+ gk + +
  HL.SW.v1.0.G015194.1  3 KVEDRSARQVTFSKRRCGLFKKANELATLCDVDIAVIVFSPGGKAFSF 50
                          6899***************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-23168IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.24154IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-24153IPR002100Transcription factor, MADS-box
PfamPF003191.1E-25350IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-111631IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-113152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEKVEDRSAR QVTFSKRRCG LFKKANELAT LCDVDIAVIV FSPGGKAFSF GQPNVYSITN  60
RFLLEQQQGF SKKITTRRRS TRRRSQSKAF DKLNEQVNEH SMELHYEKEQ KSSIEVSSDE  120
KGLMKMKKKK GKSSSSSDDD DDLSESEMMK FKEELESLKE KVKERINVME ASSTLMMLSN  180
DAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-27AGAMOUS-like 29