PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015472.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 249aa    MW: 26865.9 Da    PI: 4.7799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015472.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-181666155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++ykGVr +  +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  HL.SW.v1.0.G015472.1 16 KKYKGVRMRT-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 66
                          59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-181676No hitNo description
SMARTSM003809.7E-341780IPR001471AP2/ERF domain
PROSITE profilePS5103221.8251774IPR001471AP2/ERF domain
PfamPF008473.1E-111766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-301775IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-201776IPR016177DNA-binding domain
PRINTSPR003676.8E-91829IPR001471AP2/ERF domain
PRINTSPR003676.8E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEQNPLKPTP LTIGKKKYKG VRMRTWGSWV SEIRAPNQKT RIWLGSYSTA EAAARAYDAA  60
LLCLKGSSAN LNFPLSSTTI SSHQNMIPND VVLSPKSIQR VAAAAANTTT TTFVNDIISI  120
NTATATAAPA ATTTATTTAA TSSSPSPSSS SSSAVSSPFD LVDDEASLRG SFGSHIDMTN  180
YDYHQQQQGG VISHIDQSMA MMESWYNFDG LQSPNIDQML YNGCTSLFDP QFMEDQYEES  240
DIPLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-151675161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015868603.13e-62ethylene-responsive transcription factor ERF014
TrEMBLA0A2P5DSU92e-95A0A2P5DSU9_TREOI; AP2/ERF domain containing protein
STRINGGLYMA14G22970.23e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-32ERF family protein