PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015865.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 223aa    MW: 24323.3 Da    PI: 8.3528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015865.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-204189355
                   AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr ++ +gr++AeIrd ++    ++r++lg+f++aeeAa+a++ a+ +l+g
  HL.SW.v1.0.G015865.1 41 FRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEEAARAYDVAAISLRG 89
                          8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-134089IPR001471AP2/ERF domain
CDDcd000184.70E-334097No hitNo description
SMARTSM003805.3E-3640103IPR001471AP2/ERF domain
PROSITE profilePS5103223.9334097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-314198IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-224197IPR016177DNA-binding domain
PRINTSPR003672.2E-104152IPR001471AP2/ERF domain
PRINTSPR003672.2E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRGGGGGGG GKGTDPLLSA SVRPRIEKRP ELKLPVQEIR FRGVRKRPWG RFAAEIRDPW  60
KKARVWLGTF DSAEEAARAY DVAAISLRGP KAKTNFPSPH SGPIYHPDFH DERVSSKIDV  120
IQASRPTSSS LSSTVESFSG PRVSGHHGQQ QKMPRQRPVQ PLGQPDECHS DCDSSSSVVD  180
DNGDDCVLMS SFRTILPFDL NLPPPMDGPD FCDDLHATVL SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-21401011476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RGGGGGGGGK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022149613.17e-62ethylene-responsive transcription factor 3
SwissprotQ9SXS83e-42ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV081e-61A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_008456400.16e-58(Cucumis melo)
STRINGXP_004143195.16e-58(Cucumis sativus)
STRINGXP_004172004.16e-58(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-26ethylene responsive element binding factor 3