PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G015971.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 296aa MW: 33137 Da PI: 9.4155

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G015971.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45	2.4e-14	225	270	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r +rk+kNRe+A rsR+RK+a+ eL kv Le+eN++Lkke+e HL.SW.v1.0.G015971.1 225 RRLKRKIKNRESAARSRARKQAYHNELVSKVSRLEEENSMLKKEME 270 689****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-12	219	270	No hit	No description
SMART	SM00338	7.0E-9	220	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	223	270	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-13	225	270	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.0E-10	225	270	No hit	No description
CDD	cd14707	2.22E-16	225	267	No hit	No description
PROSITE pattern	PS00036	0	228	243	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MSFKLERILP NDKVPFRSGS SDFSIFKQTM ASQGSGQQSH FQPSSLTRQN SWYSLTLDEV 60 NNQLGDMGKP LGSMNLHELL QTIYTTETKE YSTVDAENTS LSSSLQRQAS LTLARGLSGK 120 TVDDVWKEIQ QGQKRRYNEH VKDQGRQATL GETTLEDFLV QAGLFAEASS SPAVGLHPID 180 AVTPQSYPHK FGLSSPSPSL GTLSDPTIPG RKRDASDAYE RSMERRLKRK IKNRESAARS 240 RARKQAYHNE LVSKVSRLEE ENSMLKKEME VESMLEHDSS PEPKYQLRRT SSATF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010093801.2	1e-154	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	2e-64	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A2P5FUL6	1e-163	A0A2P5FUL6_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010093801.1	1e-151	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12464	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	2e-55	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]