PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016283.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 353aa    MW: 39999 Da    PI: 8.3673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016283.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-18754148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WTteEd++l+ +++q+G g+W+  +++ g+ R++k+c++rw +yl
  HL.SW.v1.0.G016283.1  7 RGPWTTEEDQKLLAYIQQHGHGSWRFLPKKAGLQRCGKSCRLRWTNYL 54
                          89********************************************97 PP
2Myb_DNA-binding55.81.1e-1760105148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rgr+T eE+  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  HL.SW.v1.0.G016283.1  60 RGRFTLEEERTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 105
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.48254IPR017930Myb domain
SuperFamilySSF466892.21E-305101IPR009057Homeodomain-like
SMARTSM007172.0E-13656IPR001005SANT/Myb domain
PfamPF002496.8E-16754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-24861IPR009057Homeodomain-like
CDDcd001671.83E-10954No hitNo description
PROSITE profilePS5129426.73655109IPR017930Myb domain
SMARTSM007171.8E-1759107IPR001005SANT/Myb domain
PfamPF002492.2E-1660105IPR001005SANT/Myb domain
CDDcd001674.02E-1262105No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2662109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGETLKRGPW TTEEDQKLLA YIQQHGHGSW RFLPKKAGLQ RCGKSCRLRW TNYLRPDIKR  60
GRFTLEEERT IIQLHALLGN RWSAIATHLP KRTDNEIKNY WNTHLKKRLA MMGIDPVTHK  120
PQRNTLGSVA ADPKDVSNLS HIAQWESTRL EAEARLVRES RILRQVDERN SNKSNITKPP  180
ADILAATSDE LLKKMPTTFA PPRCIDILKA WESRLVLSKY NGRSDYDRTI NDTIKSSTNG  240
GSEAIPSFGF GGSTTTELCY MKVSSGTNGG SSLGFDEIFE TWGNGGDDLF SEQVFATRHL  300
EDNINLAPCN DHHNIGILTE RDTCDEQYEV NRNYWNNIFN LVNWGPSNLP VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2851095108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093592.11e-139transcription factor MYB16
SwissprotQ9LE638e-92MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2P5F6Y61e-176A0A2P5F6Y6_TREOI; MYB transcription factor
STRINGXP_010093592.11e-138(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-93myb domain protein 106