PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016371.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 376aa    MW: 41568.1 Da    PI: 4.3485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016371.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19115165155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  HL.SW.v1.0.G016371.1 115 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 165
                           59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-33115172No hitNo description
SMARTSM003802.8E-38116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29116173IPR001471AP2/ERF domain
PROSITE profilePS5103223.63116173IPR001471AP2/ERF domain
PfamPF008479.3E-13116165IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21116173IPR016177DNA-binding domain
PRINTSPR003674.3E-10117128IPR001471AP2/ERF domain
PRINTSPR003674.3E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEQSILCPIK CTEHRSITKK LTRPSKKSSS ESSSAVPRTV RISVTDPDAT DSSSDEEGEF  60
FIRQRVKRYV HEVNIETSCK PNLVSNVRKR PAVEAGPTCR RPIKTSNTSS SSPTKKFRGV  120
RQRPWGKWAA EIRDPARRVR LWLGTYDTAE EAAMVYDNAA IKLRGPDALT NFVTPSAKEN  180
PEPDITGAAS LSGYDSGEES RNLSSPTSVL HFRTHSNEEE GQKPILDDFI LEPEVVSQPL  240
KQEEEVAAAV AVAAVQECQG ETTTNSLPND LGDYLSFDLP PFEDEFFNFE YSPESTTLFD  300
PSFFLLDDMV IENDSEVSAS AGMIQPLPDY IVKEDFSDMF LESSYDTSSG TDSMCQGGDD  360
LFRDILFGSD PLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21115172159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097869.21e-139ethylene-responsive transcription factor CRF4
TrEMBLA0A2P5BMQ31e-168A0A2P5BMQ3_PARAD; AP2/ERF transcription factor
STRINGXP_010097869.11e-138(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-60cytokinin response factor 4