PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G016378.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 265aa    MW: 30098 Da    PI: 10.007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G016378.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.15.9e-52141381128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+ev+++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg d
  HL.SW.v1.0.G016378.1  14 LPPGFRFHPTDEELVVQYLKRKVHSYPLPA-SIIPEVEVCKSDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATGSGYWKATGID 98 
                           79****************************.89***************54...46799******************************* PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl
  HL.SW.v1.0.G016378.1  99 KQIVTSrGNHVVGMKKTLVFYRGKPPQGTRTDWIMHEYRL 138
                           **999857788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-5910176IPR003441NAC domain
PROSITE profilePS5100556.9214176IPR003441NAC domain
PfamPF023651.3E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVHSYP LPASIIPEVE VCKSDPWDLP  60
GDLEQERYFF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSRGNHVV GMKKTLVFYR  120
GKPPQGTRTD WIMHEYRLVA PTNPQTKATP ENKSLPQNHV IVAPIDSWVL CRIFLKKRGS  180
KNDDENLQTG VDHTVVRKPK STTRPVFYDF MTKEKKRADL NLAPTSSSSG SSGVTQVSSN  240
ESEEHEESSS CNSLPYFRRK QQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-541218115170NO APICAL MERISTEM PROTEIN
1ut4_B9e-541218115170NO APICAL MERISTEM PROTEIN
1ut7_A9e-541218115170NO APICAL MERISTEM PROTEIN
1ut7_B9e-541218115170NO APICAL MERISTEM PROTEIN
3swm_A7e-541218118173NAC domain-containing protein 19
3swm_B7e-541218118173NAC domain-containing protein 19
3swm_C7e-541218118173NAC domain-containing protein 19
3swm_D7e-541218118173NAC domain-containing protein 19
3swp_A7e-541218118173NAC domain-containing protein 19
3swp_B7e-541218118173NAC domain-containing protein 19
3swp_C7e-541218118173NAC domain-containing protein 19
3swp_D7e-541218118173NAC domain-containing protein 19
4dul_A9e-541218115170NAC domain-containing protein 19
4dul_B9e-541218115170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881782.11e-150NAC domain-containing protein 83-like
RefseqXP_015902286.11e-150NAC domain-containing protein 83-like
SwissprotQ9FY931e-103NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2P5BSW61e-151A0A2P5BSW6_PARAD; NAC domain containing protein
STRINGcassava4.1_014491m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-100NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]